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All functions

AbstractGeom
R6 Class - Abstract Class of Geometries
BlankGeom
A geometry that renders nothing
DataCubeGeom
R6 Class - Generate Data Cube Geometry
DataCubeGeom2
R6 Class - Generate Data Cube Geometry via 3D Volume Texture
FreeGeom
R6 Class - Generate Geometry from Vertices and Face Indices
GeomGroup
R6 Class - Generate Group of Geometries
LineSegmentsGeom
R6 Class - Generate Line Segments
SphereGeom
R6 Class - Generate Sphere Geometry
SpriteGeom
R6 Class - Generate Sphere Geometry
TubeGeom
R6 Class - Generate Tube Geometry
brain_proxy()
Shiny Proxy for Viewer
brain_setup()
Setup Package, Install Environment
calculate_rotation()
Calculate rotation matrix from non-zero vectors
check_freesurfer_path()
Function to check whether `FreeSurfer` folder has everything we need
conform_volume()
Conform imaging data in 'FreeSurfer' way
create_group()
Create a geometry group containing multiple geometries
cross_prod()
Calculate cross-product of two vectors in '3D'
default_template_directory()
Default Directory to Store Template Brain
freesurfer_brain() freesurfer_brain2()
Read `FreeSurfer` surface and volume files
freesurfer_lut
Query the 'FreeSurfer' labels
generate_smooth_envelope()
Generate smooth envelope around surface
generate_subcortical_surface()
Approximate 'sub-cortical' surfaces from 'parcellation'
geom_freemesh()
Creates any mesh geometry given vertices and face indices
geom_sphere()
Create sphere geometry
get_digest_header()
Function to read digest header
get_ijk2ras()
Get 'voxel' to world matrix
import_fs() import_suma()
Import 'FreeSurfer' or 'SUMA' files into the viewer structure
import_from_freesurfer()
Import from `FreeSurfer` and create `JSON` cache for 3D viewer
list_electrode_prototypes() load_prototype()
List or load all electrode prototypes
localization_module()
Launch a 'shiny' application to localize electrodes
merge_brain()
Create Multi-subject Template
new_electrode_prototype()
Create or load new electrode prototype from existing configurations
plot_slices()
Plot slices of volume
read_fs_asc()
Read `FreeSurfer` ascii file
read_fs_labels()
Read FreeSurfer Annotations
read_fs_m3z()
Read `FreeSurfer` m3z file
read_fs_mgh_mgz()
Read `FreeSurfer` `mgz/mgh` file
read_gii2()
Function to load surface data from `Gifti` files
read_mgz()
Function to load `FreeSurfer` `mgz/mgh` file
read_volume()
Read volume file in 'MGH' or 'Nifti' formats
renderBrain
Shiny Renderer for threeBrain Widgets
reorient_volume()
Function to reshape data to `RAS` order
save_brain()
Save threeBrain widgets to local file system
seeg_prototype()
Create 'sEEG' shaft geometry prototype
download_template_subject() download_N27() set_default_template() threebrain_finalize_installation() available_templates()
Download and Manage Template Subjects
threeBrain()
Create a brain object
threejsBrainOutput
Shiny Output for threeBrain Widgets
threejs_brain()
Create a Threejs Brain and View it in Browsers
video_content()
Add video content to the viewer
volume_to_surf()
Generate surface file from 'nii' or 'mgz' volume files
create_colormap() save_colormap() freeserfer_colormap() load_colormap()
Color maps for volume or surface data
add_voxel_cube() add_nifti() create_voxel_cube()
Generate volume data from 'MNI' coordinates