'ANTs' functions for 'Halpern' lab — halpern_preprocess • rpyANTs

'ANTs' functions for 'Halpern' lab

Usage

halpern_register_ct_mri(
  fixed,
  moving,
  outprefix,
  fixed_is_ct = TRUE,
  verbose = TRUE
)

halpern_register_template_mri(
  fixed,
  moving,
  outprefix,
  mask = NULL,
  verbose = TRUE
)

halpern_apply_transform_template_mri(roi_folder, outprefix, verbose = TRUE)

Arguments

fixed: fixed image as template
moving: moving image that is to be registered into fixed
outprefix: output prefix, needs to be absolute path prefix
fixed_is_ct: whether fixed is 'CT'
verbose: whether to verbose the progress; default is true
mask: mask file for template (skull-stripped)
roi_folder: template 'ROI' or atlas folder in which the image atlases or masks will be transformed into subject's native brain

Value

A list of result configurations